Changelog
Current package versions and latest changes
This page summarizes the latest public package versions and short release notes for the core SigProfilerSuite tools. Detailed changelogs and release discussions remain in the corresponding GitHub repositories.
| Tool | Current PyPI version | Latest change summary | Links |
|---|---|---|---|
| SigProfilerMatrixGenerator Matrix generation |
v1.3.6 Oct 28, 2025 |
Latest public PyPI release. Recent v1.3.x notes include documentation updates, custom output directory support, and maintenance of matrix-generation workflows. | Releases Changelog Issues |
| SigProfilerPlotting Visualization |
v1.4.3 Jan 22, 2026 |
CI/GHCR deployment updates and compatibility fixes affecting tmbplot.py. | Releases Changelog Issues |
| SigProfilerExtractor De novo signature extraction |
v1.2.6 Jan 6, 2026 |
Updated the default COSMIC reference version to v3.5 and updated the SigProfilerAssignment dependency for COSMIC v3.5 support. | Releases Changelog Issues |
| SigProfilerAssignment Signature decomposition and assignment |
v1.1.3 Jan 24, 2026 |
Recent v1.1.x releases add COSMIC v3.5 support as the default reference and update reference files across supported genomes. | Releases Changelog Issues |
| SigProfilerSimulator Simulation and null models |
v1.2.2 May 27, 2025 |
Added support for deterministic simulations using a seed file. | Releases Changelog Issues |
| SigProfilerClusters Clustered mutations |
v1.2.2 Jul 23, 2025 |
Updates to the variant_caller parameter and plotting improvements. | Releases Changelog Issues |
| SigProfilerTopography Genomic topography |
v1.0.108 Jan 2, 2026 |
Latest public package release for topography analyses of substitutions, dinucleotides, and indels across genomic features. | Releases Changelog Issues |
Version information reflects public PyPI releases and available GitHub changelog/release notes at the time this page was generated. For reproducible analyses, cite the specific package versions used in each project.